Sorry to hear the computer is clueless as usual. Did you check after a failed start? I think it's supposed to hold onto codes for a certain number of starts, but I don't remember that for sure.
An ignition issue on one cylinder shouldn't impact the other five.
If you didn't pull the dizzy, and the tooth count between cams and cam/crank is correct (and it was when you started), then it shouldn't be timing. If you messed with the plug wires, confirm that they all went back where they're supposed to. I wouldn't expect the cap/rotor to suddenly and completely die, but given you had the cap off, I would pull it and just make sure it's not wet inside and the rotor is present (you didn't remove it to clean it and forget to put it back) and correct (mounting bolt hasn't fallen out or something).
Other than that, we're back to checking for spark and fuel. If you're sure it's getting fuel past the injectors, pull a plug wire, crank it, confirm that you have spark. If you don't, check at the coil wire to see if the cap/rotor are the problem.
If you have spark, but aren't sure fuel's getting past the injectors, spray some carb cleaner or starting fluid into the intake. If it runs when you spray fuel at it, then you know it's a fuel issue.