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Auto ecu in my manual pathfinder?


DDAHL90SE
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So recently I flooded the interior of my 90 pathfinder, before I was aware of the ecu whereabouts. Anywho, it won't start but will crank and sounds like it wants to fire for a second. It was hydrolocked, I freed the engine up and replaced the plugs. I can only assume the ecu is toast so i planned to replace it next. So my question is, if I happened to purchase a 90 pathfinder automatic ecu am I going to encounter issues with my manual pathfinder? I'm assuming I will due to shift points and whatnot from the auto but was curious if anyone had input on this. Would love to get my beast back on the road and away from water... thanks for any input!

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